I was just about to comment on that... I'm not sure it's just the article's means of spinning things to get a rise out of readers or it's genuinely the case (I should probably try to find official publications...), but regardless it leaves a horrid taste in my mouth.
When the pilot noted a problem with breathing, he presumably put the plane in a dive to get below 10,000 feet, which I believe is the standard protocol for a combat aircraft. If he simply passed out, that might have been the reason for the lack of communication - flight paths on any aircraft are usually stringently monitored, so breaking flight from cruise-at-altitude without a call is very strange indeed. In any sense, the point is he didn't recover... blacking out from lack of oxygen is never your own damn fault, and I'm ashamed of the Air Force if they're passing the blame of mechanical failure onto a pilot qualified to fly what is supposed to be the most potent tactical asset in our arsenal.