That's it, I am hereby quarentining all non-standard rooms until they are fixed or some kind of consensus can be made as to what to do with them. From here on out, all single-level rooms must be exactly 46 pixels tall, including a black line top and bottom (so 44 usable). Multistory rooms MUST account for an additional 21 pixels per extra story for ventilation ducts/utilities/ whatever. So that makes valid heights take on the following values: 46, 113, 180, 247, 314, etc. Rooms should be as close as possible to a multiple of 200 pixels wide, though this requirement is slightly less important, but it will save a bunch of useless padding later. I'm going to devote a "hanger deck" to some of these non-standard things so that they don't all have to be changed, but all of the recent additions that are completely ignoring floor spacing are getting pruned until they are fixed.
I'm also going to break down and start arranging the station in a more logical fashion. I'm thinking docking will go at the bottom, with main engineering above that, followed by "reception", "community", perhaps some empty space, and then administrative. Things are getting logically partitioned anyway, but right now the spacing is horizontal when it should be vertical. Final station width I'm capping at 2000 pixels, plus an extra 100 on each side, so we should have plenty of room side-to-side.