Physically, every single ship that has a gravimetric drive has atmospheric capability, simply because they can in most cases generate greater acceleration than the gravity acceleration, in which case the ship won't fall. That's the physics.
Also, their abilities WOULD be greatly impaired, compared to space. This is because the air friction slows the ships down and they constantly need to pour huge amounts of energy into the gravi-drive to counter the effects of gravity. In an orbit, ie. a free fall situation, much more energy is saved for other functions.
So, any gravimetric vessel has
ability to get into atmosphere and get out of there in one piece - as long as the gravimetric drive works and gets enough energy. Therefore the planet size (gravitational acceleration) is ctually the only limiting factor in gravimetric ships' ability to operate inside atmospheres. A Sharlin could operate in atmosphere, but it wouldn't. That's because it would really serve no military purpose for a warship to enter atmosphere - except in a clever plan to destroy a Shadow vessel - but the fact that it doesn't want to do that doesn't mean that it
can't do that.
On the other hand, Thunderbolt and Kestrel are model examples of ships that have clearly atmospheric functions apart from space flight. They are craft that are genuinely atmospheric-capable. Then there are ships that are planned to operate in vacuum, but they could operate in atmospheres - poorly, perhaps, but it wouldn't be lethal to them. Then there are ships like practically every EA ship that are planned exclusively for space, like Aurora and Omega... They couldn't survive atmospheric operations in any conditions.
So. For example, every gravimetric ship that has ability to generate a>g accelerations are capable of operating upon Earth atmosphere. That requisite, I daresay, is pretty much fulfilled by any gravimetric ship in B5 verse.
BTW, landing is not really an issue. They can just stop and float in the air, say, 0,5 m from grounf until they run out of energy or the gravi-drives fail.
In a way, a gravimetric vessel would function just as well as a Zeppelin does. Except that instead of lighter-than-air gas it would use gravimetric drive as source of the lift. But otherwise, it woulr work just as well. It would be a ridiculous thing to do, but a Sharlin
could get to the surface and get away if it were an absolute necessity.
And, actually heat issues wouldn't be as big a problem as one would think. Typical temperature difference between deep space and atmosphere is about 270 Kelvins. That's a fart of a fly compared to definitely huge temperatures caused by the ships' generators, at least one would think so. Besides, air flow would actually boost the radiator systems since it leads heat much better than vacuum. Also, the ships would have no problems withstanding normal atmo pressure. Water, however, would be different case. While it is true that the ships must be waterproof as they are vacuum proof, and despite the fact that most ships would float, water is not a good element for a spaceship of any kind. Mainly due to corrosion. Other thing is that space ships are designed to keep air inside, while in water the pressure is inverted and the hull needs to keep the water out from flooding the insides of ship. In space, small leaks on door packings can easily be replaced by attitional air coming from the pressurization system; however, when water tries to come in from those little holes, the internal atmosphere cannot simply block its way - it would require as big a pressure as it is in outside water, or preferably slightly bigger. In any depths above 15 metres depht (in earth gravity, and presuming that the fluid has density of one) the pressures needed to keep the water out would be big enough to cause divers' disease on humans. Many ships are bigger than 15 metres. And on deeper, you get all kinds of fun stuff such as nitrogen poisoning (which would require the nitrogen in the air being replaced with, say, Helium or other inert gas...).
Of course I'm talking about human fysiology here, I can't know what issues the Minbari would have under great physical pressure from surrounding atmosphere.
What I'm saying is that while a ship might be completely able to fly in atmosphere and vacuum, it might not be *ideal* for underwater ops.
And, of course, if a gravimetric vessel is designed to move on atmosphere, it should be aerodynamically designed too. Just like a Lintira or Nial. So, if a gravimetric ship has lift producing areas and aerodynamic control surfaces, it's quite certain that it has a role that involves operations in atmospheres. Any gravimetric ship can, of course, operate in atmosphere even without aerodynamic shape, but that would be inefficient and in case of gravimetric drive failure they would become literally ballistic bricks, whereas a ship aerodynamically designed would be able to glide.
IF the ship has no gravimetric drives, it needs to be aerodynamically designed to operate in atmospheric conditions, ie. it needs to be aerodynamically stable and it needs to be able to convert air speed into lift force. Practically only fighters, bombers and shuttle-class ships are small enough to effectively operate as air planes. Bigger ships need greater air speed to produce great enough lift, and that of course adds to structural stress and heating of the surface...