Star Wars Vs. Star Trek debates have been going on since both universes appeared. You don't have to look very far to know which universe I prefer. This is simply pointless, both fan sides(Star Wars & Star Trek) have their own preferences and disliles in the universe they prefer. I would love to fly with an A-wing, but I simply can't stand the Ewoks. I cannot say anything about Star Trek, I saw one or two episodes of the TV series, so all I could say is that that universe is a bit odd. The FS universe appeared strange and alien for the first sight, I simply had to get used to it. Even if I saw more about Star Trek, I would still prefer Star Wars since I know it far better and I have been grown up by that universe and the games/books based on it. The time I spent with SW confirms and immobilizes my addiction.
I don't find comparing and dissecting two different universes a good idea. No offence, really, but a debate like that is heavily flammable at HLP. It is just like opening a thread about 'Pro-choice vs. Pro-life'. I would predict a two-day lifetime for such thread.