why do you want it on a disk? i gotta be honest, it's a pretty bad campaign. i wouldn't recommend spending extra time or money on it to get a hard copy. you'll play it once and never again, especially with ST:R out there. maybe once more years later, just to remind yourself how bad it was and how awesome ST:R is.
anyway, the only compatibility issues i recall is that my silent threat disk install from the fs1/st combo overwrote the 1.06 patch somehow, and auto-update wouldn't fix it. since whatever server the game auto-updates from is long gone by now, that won't work anyway and you'll have to find a 1.06 patch floating around on the interwebs. or just not update. i don't really remember anything broken that 1.06 fixed, it was just needed for multiplayer.