there's nothing you can do to avoid the clipping, but you can try to reduce it
and it affect not only the intakes with parallel faces, it happen anytime there are convex areas, since it depend by 2 (or more) close faces one behind the other.
So the problem is the distance of the internal and external faces.
Things you can do:
If you can, scale a little up all the mesh: the distance between internal and external faces will increase and the clipping will probably be reduced (but to gain major advantages you should scale it A LOT).
Another thing you can do is to make the intake more narrow, increasing again the distance between internal and external faces.
Making the intake deeper or shorter will not change the amount of clipping(how weird it is), but will reduce or increase the clipping area.
Last possibilty: change the intake shape, making the internal and external faces not parallel, with the inside of the intake very little, welding the borders: the clipping area will be reduced to just around the borders.