huh?
Anyway, back on track: Could you just make bombs invulnerable to this type of weapon and make all the missiles bombs? IIRC, there are concussion missiles, proton torpedoes, I THINK an EMP torpedo, and few other types of secondary weapons in Star Wars, all of which can, canonically, be targeted and destroyed by shooting at them. Therefore, I suggest making all missiles bombs.
Speaking of which, there were a special kind of armored torpedo employed by the Remnant of the Empire, "Diamondbacks" I believe they were called. Dash somethingorother shot at one of these in an attempt to destroy it before it hit a transport carrying a load of civilians. it didn't blow up and it did kill the transport, and Dash was so torn apart, unable to believe he'd missed, that the distraction and stress caused him to hesitate and be killed on his next mission in one of the X-wing novels (all IIRC), so if we could have some bombs that are invulnerable, or just take multiple hits to destroy, that would be great. Or maybe these could just be regular freespace-style missiles, effectively rendering them invulnerable.
We also (for ship-capture missions) need to make it so a ship under a tractor beam cannot jump to hyperspace. Could we make a hyperspace subsystem that autorepairs, even from 0%, which gets destroyed by this specific weapon, or is that a little too complicated?