I can't speak for the coders, but I know there has been a huge effort to reduce the number of command line flags in recent years. Also as a content producer for a major mod, I would be really frustrated with a launcher option, because of the possibility that a user could say 'hey, your missions are all broken!' and then it turns out they've had 'swarm missiles use lead pursuit' turned on and it's somehow made all my bombs behave differently.
I don't want to be discouraging, but I would really discourage a command line flag. In general I would say that command line flags should only alter aesthetic, visual, or interface elements, never anything gameplay-relevant.