Yea, the whole mod is freaking out. The ability to have 2 primary banks is coming and going. I think it is a problem with one of the missions - the last one I made and one of the capital ships in there. If I delete the cache I can get multiple banks, sometimes, if I start out in a clean 2 ship mini mission. If I go to the big mission I either have only 1 bank or no banks. I have run the debug and I get 6 'vec3d something or other errors' followed by a killer 'wep <=0 something or other error' and I happen to have 6 turrets on the cap ship so I think that is the problem.
I am going to shelve the project until after the holidays - I need a break. I can't possibly finish the project until 3. 6. 11 comes out anyway because I am depending on being able to run video at basically anytime during the game which I have heard you will be able to do in '11.
Thanks for the suggestions and help!