SJ Sathanas 01
GTD Bastion
GTD Nereid
GTCv Lemnos, GTC Sparta, GTC Zollner (Apocalypse)
GTC Templar, GTC Malta, GTC Ertanax (Clash of the Titans II, if not, Apocalypse)
GVCv Nebtuu (Exodus)
GVC Ptah-Nu (Apocalypse)
SC Orcus, SC Demogorgon, SC Hela, SC Baal (Their Finest Hour)
SCv Abraxis, SC Gibborim (Exodus)
SC Thanatos, SC Melchom*, SC Bane* (Apocalypse)
*If you screw up royally, these two could have escaped through the node (or wind up disabled in which case the supernova never happens).
Others (Demo and Other Missions):
SD Chemosh
SCv Chamos
SCv Rahab
SCv Armaros