I'm acutally in the middle of redoing my setup. I can send it to you if you want (assuming you still care).
The basic setup is as follows:
throttle is set in bands so the area past the detent activates afterburner (sends TAB), the rotaries control my power level (kinda), the hat switch concentrates shields (and controls lateral thrust when the pinky switch is held down) and the buttons balance shields and transfer power between shields and weapons. The mouse wheel has weapon switching on it, but I might move those to the stick.
On the stick the fire button does missiles, and c fires countermeasures, the lower HAT switch is the default look mode (might change it), while the upper HAT does targeting. In mode 1 it targets hostiles, reticule and bombs, shift targets friendlies and escorts. In mode 2 it targets subsystems and turrets with shift allowing me to target the subsystem in my reticule as well as uninspected cargo.
