[ShivanSlayer]

A strange thing happened to me last night.  I was doing part 1 of my playthrough of Renegade Resurgence and on the mission where the Aquitaine is destroyed,  I fled to the Vasuda Prime node too early and all GTVA ships turned hostile after Commander Guy branded me a traitor.   I destroyed two fighters before fleeing and despite the destruction of the Aquitaine, Admiral Petrarch came back from the dead to condemn me and tell me I had committed treason.

[Goober5000]

Ah, mission bugs.   Good times.

[deathspeed]

...Admiral Petrarch came back from the dead to condemn me and tell me I had committed treason.

Now "I Am The Resurrection" by The Stone Roses is stuck in my head.

[+ Rennie Ash +]

Doesn't "Their Finest Hour" play victory music sometimes? Or at least I saw that happen in a Youtube video.
While they tell you in a sombre voice about the loss of the Colossus

[Goober5000]

It does.  When you complete that mission, none of the objectives are failed.