I'm BAAAACK!!!
Sorry 'bout the wait... I don't get online much.

Anyway... Black Wolf? No offense, but it might help if you didn't shoot yourself in the foot.
It just can not extract enough oxygen from the water to jheep going at full speed, and full speed is a useful thing to have when you're running from predators. Wouldn't it be useful to have a second method of obtaining oxygen, so you could swim at full speed for longer. Wouldn't it be great if you could just poip up to the surface... sorry, top of the water and take a gulp of air? Wouldn't that be a big advantage? Absolutely it would. And it was. (Quote from Black Wolf on pg. 22)
The problem is that the second method would be useless until at least mostly fully formed... If fishy tried going full speed with a little blob of cells that were only part of the "lung", then fishy would get eaten. Therefore the partially formed lung would be discarded because it was in no way beneficial.
Because it's a damned good idea to get out of the water to do one thing - reproduce. Put yourself in the Devonian. I know that'll be hard because it was more than 6000 years ago, but just try a little bit and you'll get it. The earths vertebrate population is thriving in the oceans, but with the exception of plants, nothing larger than (admittedly pretty big) insects has colonized the land. So you're a fish, with lungs, with primitive limbs (how did they evolve them you say? Well, you didn't, so I'm not going to tell you because I do have to keep studying at some point. But if you are interested I can run through that one as well. Limbs are always fun), but you have a problem. You lay non-shelled eggs that are just chock full of the kind of nutrients that make then everybody's favorite snack. So, what's a fish to do? Well, how about this... what if you got your lazy ase up out of the water, trundled the few metres over dry land to that semi-isolated pool over there and lay your eggs in that? Then since nothing else can make the distance, your eggs'll be safe, and then when the rains come and reconnect the pools to the rest of the water, your babies can swim out like good solid baby tetrapods ought to.
Another problem: Where would it get the instincts to perform this act? Unless I'm mistaken, fish
do get their mating/reproduction habits from
instinct. So what would happen is fishy would continue to lay eggs in the water and getting those nutritious objects eaten until it miraculously (oops)
accidently mutated the complex programming required for the new instincts.
And about the Archaeopteryx:
I notice none of the things you mentioned were not fully formed (except for the "hands"

which are nothing more or less than
fully formed claws. Indeed, you simply listed a bunch of body parts which you say are proof of its being a transitional form because other animals have them too. The platypus has a tail like a beaver, a bill like a duck, lays eggs like a lizard, and has fur like an otter. So what is it? A sort of transition between mammals, birds, and reptiles all at once?

Speaking of instinct, how the heck did any of the thousand-mile plus migrators get their instincts programmed in time to keep from freezing their butts off? You could say that they gradually moved south as winter gradually set in over millions of years, except the trees from that "era" don't show any signs of unusually long fall seasons.
And speaking of shooting yourselves in the foot (BTW someone should combine "hopping" and "snipe" to make ""footshot"

) more than once snowflakes have been mentioned as proof of evolution in nature. May I ask a question: If this is evolution, then why do all snowflakes have such obvious design? Why are there
NO snowflakes that are just flakes of ice with no particular beauty? (Don't you DARE mention hail; they're two separate things and you know it.)
I have to go now, but I will be back with (among other things) an explanation of my Freespace analogy and a refutation of the ridiculous argument posed by ngtm1r:
BTW ngtm1r, I paraphrased Adams' Hitchhiker's Guide to the Galaxy; and the source of the "proof destroys faith" logic is from Hebrews 11:6 which says that without faith it is impossible to please God, not it is impossible for God to exist.
Without faith God's influence is...well, nonexistent. So unless he reverses course and pulls an Old Testament on us he's going to be a nothing, a nonentity, to the world. And it would certainly require the reconfiguration of pretty much every organized religion there is into something very different, since they are, after all, faith-based.
Regardless of this point, however, my argument could actually be considered to have gained more weight, not less. Consider what's worse: not having to deal with an omnipotent omniscient being, or really, really pissing off an omnipotent omniscient being?
Which pretty much amounts to the predicted

.

'til then,
m