If we go back to the subject:
I really don't believe that we can even think this as a beginning of that ant species evolution. Even in the article the researches mentions having studied similar 'gardens' (which may be hundreds of years old) elsewhere in the South America, so this doesn't seem to be a new phenomenon. Rather only recently discovered (big difference). And just think about any species that grow to be dependant on other species (for example koala). What if the host plant is diseased and in some areas totally wiped out?
BTW. Different plants species have very different chemical compositions (in VOCs or volatile organic compounds, the ones which smell), how hard can it be for an ant to id different plant species perhaps by tasting or by smell? Even human can recognize certain odours (even when encountering these in extremely low concentration), so i would suppose that ants have evolved to recognize the host plants species also by these compounds, in other words like tuning their senses for the compounds that are most likely vital for their survival => if they take down a wrong plant, the whole ant colony might be destroyed (again, natural selection)...