A little weirdness. Playing the latest release available through Knossos.
. Completed the mission but did a lousy job of protecting the escape pods. At the debrief screen, I entered the options menu, changed the difficulty from 'Medium' to 'Very Easy' (I wanted to see if it was even possible to save all the pods), then hit the 'Replay Mission' button. Played through the mission again and fared no better (because I suck), but couldn't finish
the mission because the surviving pods went into the Soyokaze's docking bay and then just sat there without actually entering the ship. I quit to the flight deck and found myself in the Soyokaze's main hall; upon entering the briefing room, I found that the campaign had flagged Betrayed
as completed and kicked me forward into Exodus
EDIT: Fun fact: I read through the thread and found a comment of mine from way back in 2008 (on page 4) asking whether or not it was possible to save all the pods. I guess not.