I mean, it is kind of a stupid thing to get riled up about, but that goes for both sides. I mean, were the Christians in the audience really going to feel uncomfortable if there wasn't a prayer? All the prayer seems to be doing now is making atheist students uncomfortable. It's the same kind of stuff that happened while I was in the service; at mandatory formations and gatherings, no less. I can understand where this kid's coming from.
And yeah, the kid was a bit aggressive in the way he handled it, but just about everybody botched this whole thing. It's something that should have been small and taken care of between a few people, but it pointlessly escalated. Nobody's hands are clean in this.