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really?[/edit]
"Salvation hinges on the grace offered by the Son of God, not by how I believe the Earth came into being."
Excellent, out of your entire post I think this one sentence is the most important thing you said. If there is a God, and said God is good and worthy of praise, then, spiritually, the important thing is not about the facts of the mechanics of the universe, but rather how said God wants you to live. I think this is particularly important, because it means that you can consider the mechanics of the universe without having to hold yourself back for fear of what the repercussions will be toward your faith. With this attitude you could learn that every word of the Bible was fiction, but still maintain your faith, and yet also harvest the fruits of knowledge (well, unless god tells you not to. bah, but he wouldn't to that). if you accept that the Bible might as well be fiction then you don't have to 'defend' it from science, the trains don't meet.
"everyone everywhere believes for some reason or another that there is a "right" way to live and a "wrong" way. There is no "naturalistic" explanation for this."
actually there is, and you go on to address it.
"In this instance, the "herd instinct" and the "self-preservation instinct" are in conflict. Something else, something entirely different than any inborn instinct, causes us to choose one of these two instinctual responses as being a more just course of action."
a fish swims upstream toward it's spawning ground, but a bear waits for it, the fish sees the bear and now it's spawning instinct is in conflict with it's stay-the-****-away-from-bears instinct. yet as we know, the fish does not sit indecisively in the stream, one of the two instincts wins, and the fish acts accordingly. Now let me ask you, what do you think it would be like to be one of these fish, how would that instinct feel? How would you be compelled to risk life and limb (well, ok, fin I guess, as fish don't have limbs) to exhaust yourself swimming up some stream you don't even really remember? maybe it would feel a lot like how we feel when we do something 'wrong'?
A lot of people like to assert that humans are born blank slates. I am not one of these people. I am of the opinion that we have motivations and urges built into the structure of our minds that has it's origin in the DNA that codes for the construction of all tissues in our body. The common elements of most moral codes found throughout all cultures is likely inborn. but even if it is not, it does not have any bearing on the supernatural, it is completely logical that a social animal would develop behaviors that benefited it's group at the cost of it's self, even if these behaviors were learned from parents, or copied from peers. And that's the neat thing about evolution, it will provide solutions for problems that work, not ones that make sense, so any of those options (and others I won't ever think of) is doable.
"The problem I have, however, is in combining this with the idea of mutation to create a theory of evolution."
if you accept that mutation occurs and that natural selection works, then why do you have a problem assuming that they both happen?
"How can mutations that are supposed to be random be guaranteed to bring about beneficial change?"
they are not.
"what is to say that those same mutations won't reoccur later down the line?"
only the very largeness of the number of possible mutations makes it unlikely, but in principal nothing would stop it.
"Why does there seem to be an overall trend of what we would call advancement or progressiveness in increasing complexity?"
first off the concepts of "advancement" or "progressiveness" are simply human concepts, we are a rather arrogant animal an assume we are the best of everything (you've noted this yourself in describing man's hubris), naturally we look at the history of life and assume we are the absolute pinnacle of it all, when in reality we are just simply a byproduct of it.
now to more directly answer your question, why we see things like bacteria then eukaryotes then multi-cellular life is that at a few (quadrillion) points in time mutations occurred that led to a (very small) change in the organism. for each mutation it either provided an immediate benefit, or was neutral enough for the mutation to survive in the population. apparently the changes that led to the more structured internals of a eukaryotic cell, or cells living in tight colonies (leading to multi-cellular organisms) were of utility to the populations were these mutations occurred. there is no goal or drive for things to become more complex or 'better' in fact often the simpler creatures survive better (it's why they are still around), and if you look at the fossil record it seems like life didn't bother to get very complex until relatively recently, it's only been the last 500 million years (of 4.5 billion) were we have had organisms that we could call animals.
"Any designer will tell you that the more complex something is, the LESS likely it is to run efficiently, the LESS likely it may survive."
Tell this to Northrop Grumman, Lockheed Martin, or the people who ~design~ and build aircraft carriers. Yes, these systems are prone to breakdown due to their complexity, but they provide capabilities that offset this. Now it is not a simple fact that one or the other way is better, the fact that we are still fighting a war in Iraq against people using improvised explosives proves that simplicity has it's advantages to, but the fact that we haven't been driven out either shows that simplicity does not trump complexity. it is a cost benefit trade off and if complexity is worth the cost it will win, or at least keep going.
think about it this way, what is more complex, a gun, or a sword? guns jam all the time, and require a lot of upkeep, but what happened to the arena of warfare when guns were invented? can you even imagine sending an army armed with swords against an enemy armed with guns? yet even with the gun's dominance on the battlefield solders still will carry a combat knife, cause sometimes the old simple knife WILL trump a gun.
besides by count, the number of 'complex' life forms that have ever existed is
_massively_ dwarfed by the number of 'simple' life forms.
""The Environment changes to better meet the needs of the changing environment." WTF?"
WTF? indeed. no idea what you mean here.
"And if I believed in the entirety of the Theory of Natural Selection, this would still remain true."
Natural Selection is a law of Evolutionary Theory, much like how Conservation of Momentum (for every action there is an equal and opposite reaction) is a law of Newtonian Motion Theory (aka Classical Mechanics).
This is a nit pick, so, sorry for being a nitpick, but I figured this would be a good point to help clarify some scientific terminology that a lot of people misinterpret, so we don't use the same words so mean different things.
"Plus, this does nothing to account for the onset of what we call sentience, consciousness."
no, it doesn't, at least not directly, but it was never intended to. Much in the same fashion as how quantum mechanics does not explain the tides.
"Scientific Method states that you cannot get something from nothing. Something has to have ALWAYS existed. Physics (as best I understand it) calls this the Higgs Boson, the factor they decided to use to fill in all the "wtfs" in the standard model."
ah.. err..... no. Higgs Boson is the elemental carrier of mass, it has nothing to do with the creation of the universe, other than it was a product of it along with all the other elemental particles. and it's not Scientific Method that states that, it's the law of Conservation of (Mass and) Energy, which is a staple of all physical models made in the last 500 years that I am aware of.
but your problem here is that this is a problem that science brought on it's self, it is a fact about the universe we have determined and does not impact a creative God one way or the other. This is because tacking a god into this doesn't help, it just makes it unnecessarily more complex.
you say god made the universe.
I ask what made god.
you say god is eternal.
I say the universe is eternal.
god is unnecessary, you end up with an explanation that is just as unsatisfying and unuseful with god as you do without.
"I call it God. God Himself declares it, stating that he is the great "I AM." "Before Abraham was, I AM," says Jesus. When Moses asked God, revealed in the Burning Bush, what his name was, The Hebrew text, translated to English, states that he calls himself, "I AM THAT I AM." Now, Hebrew thinking is somewhat Eastern when compared to the US, so let's go with the Greek thought on the matter. The Septuagint was the Hebrew laws and scriptures translated into Greek. The wording used for "I AM THAT I AM" in the Septuagint literally translates to, "I AM THE ONE THAT IS." This is a very deliberate thought, speaking to the permanence of God. "Before anything was, I AM. There is no beginning to me, nor any anding. I am not, "I was." Rather, I AM. Always.""
ok, this seems to be something of a tangent, but I think my response to this should be;
I have no problem if you what to use the God of the Gaps. there are points at which science has not yet penetrated, beyond the horizons of these frontiers I have no problem with people putting God there, I just personally doubt such a position because it has been proven false in the past when the old frontiers were passed.
"I am wholly comfortable saying I have no effing clue."
ok, that's not a bad answer, at least you aren't convinced that it is 6000 years old.
now, finally, and out of order
"Evolution's king failure next to Genesis is in explaining how things began in the first place."
This is by design. Science does not favor all inclusive theories of everything. yes it does favor
complete theories about a particular subject, for example physicists have been trying desperately for the last hundred years or so to find a mechanics theory that explains things as well a quantum mechanics and relativity do but with out the incompatibility/discontinuity that the two theories currently have (this has led to the cluster **** mess known as string theory(s)). but when/if this theory is completed, it will be limited to simply describing how particles/atoms/objects/forces interact, it will not describe how groups of flocking animals behave, it will not solve NP complete problems, it will not find prime numbers, it will form the basis of chemistry, but it will be largely independent of that on a whole. The theory you are looking for is Abiogenisis, and because it describes a one time event (rather than an ongoing process) that to the best of our knowledge has not happened seance and cannot be tested there is very little work done on it. If you wish to say "God did it" here I cannot offer you a much better explanation. I personally do not hold that position, but the evidence on this frontier is unfortunately quite thin, so I can't really feel too much superiority in my position here.
Abiogenisis is not nearly as well supported as Evolution is.
also, Genesis doesn't actually 'explain' ANYTHING, it simply states it.